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De novo design of protease-activatable cytokine prodrugs

Preprint Created on 22 Sep 2026 bioRxiv

Cytokines can elicit potent antitumor immunity, but their clinical use is often limited by systemic immune activation and dose-limiting toxicity. Protease-responsive masking offers a way to improve selectivity by linking cytokine activity to disease-associated protease cleavage, but current approaches have faced several challenges. Here we describe a de novo protein design strategy for generating protease-activatable cytokine prodrugs that overcomes these challenges. We use this strategy to design and characterize cytokine prodrugs and well-behaved AND-gated split systems that require both target-dependent colocalization and proteolytic unmasking to generate active cytokines. In challenging syngeneic tumor models, our IL-21 prodrugs reduced treatment-associated toxicity while maintaining antitumor efficacy.

Shin, H., Tello, J. G., Kim, C. J., Chun, J.-H., Peprah, F., Parent, B. D., Atajanova, T., Mahmud, R. A. I., Qiang, L., Aguirre, A. J., Dougan, S. K., Dougan, M., Baker, D.

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