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Microfluidic System for On-Demand Imaging of Organotypic Slices

Preprint Created on 19 Jun 2026 bioRxiv

Organotypic brain slice cultures (OSCs) provide a physiologically relevant model for recapitulating complex tissues in vitro. However, the longitudinal monitoring of dynamic processes in OSCs through high-resolution imaging is limited in standard culturing methods, as they rely on slice placement on porous membranes at the air-liquid interface to preserve tissue viability. Here, a new experimental paradigm based on a modular slice culture insert is introduced, which is compatible with static and perfused culturing, and facilitates longitudinal observation of cellular and tissue dynamics at high spatiotemporal resolution. Besides compatibility with conventional culturing in well plates, the insert is integrated into an automated microfluidic instrument to provide user-friendly operation while enabling precise temporal fluid control and compound delivery. The system is applied to monitor calcium responses and cellular morphology of virally labeled cerebellar astrocytes and Purkinje cells exposed to different concentrations of glutamate. Cellular responses were evaluated at baseline, during glutamate exposure, and 48 h and 96 h after stimulation to identify acute and long-term excitotoxic effects. Our results indicate that the developed system enables high-resolution monitoring of cellular morphology and dynamic events of the same intact tissue over multiple days, which provides a robust foundation for mechanistic investigations of neural signaling.

Petr, J. B., Ferrari, E., Hagelueken, L., Cassano, M., Hierlemann, A., Modena, M. M.

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