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Microbial inoculation accelerates post-fire soil recovery in a mixed conifer forest

Preprint Created on 14 Jun 2026 bioRxiv

High-severity wildfires of increasing size and frequency result in release of carbon dioxide and loss of timber resources, reduction in biodiversity, loss of soil, diminished water quality, and reduced recreational opportunities. Forest recovery strongly depends on the reestablishment of soil microbial communities, motivating research on how restoration of soil microbiomes in burned forests can be accelerated. Here, we used a high intensity burn pile experiment to test the effectiveness of post-fire native soil amendment. This design enabled us to sequentially and simultaneously sample unburned, burned, and inoculated burned soils while holding post-fire abiotic factors constant. All conditions were sampled at six time points across an annual hydrological cycle and analyzed using 16S and ITS rRNA amplicon sequencing, genome resolved metagenomics, metatranscriptomics, and soil chemistry. Fire sharply reduced bacterial and fungal diversity and eliminated ectomycorrhizal and ericoid symbiotic fungi. Inoculating the burned soil with native microbes accelerated recovery of microbial diversity and of functions associated with nutrient cycling, especially nitrogen transformations. Despite introducing the full diversity of soil microbes from adjacent unburned forest, only a small subset of adapted organisms were engrafted. Native soil inoculation stimulated reestablishment of mycorrhizal fungi, including genera that form essential symbioses with conifers, although this response was not persistent over the full year. Nonetheless, reestablishment of mycorrhizal fungi for even a window of time may facilitate early forest regrowth. We conclude that, by microbial inoculation, recovery that would otherwise rely on dispersal from distant sites is accelerated, potentially enhancing reforestation efforts.

Weiss, E. L., Banfield, J. F.

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