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From topography to connectome: Towards an integrated understanding of the resting brain

Preprint Created on 08 Jun 2026 bioRxiv

As the field expands from early research into the human connectome, there has been a fast expansion in the number of analytical approaches to study resting state functional MRI (rsfMRI) data. With increasing focus on individual differences, topographical brain maps of spatial organization have emerged in addition to traditional functional connectomes. Here, we developed a deep-learning model to embed maps of network topography and faithfully translate to individualized connectomes. Results confirmed the validity of the surface vision transformer based on reconstruction accuracy (0.73{+/-}0.09) and accurate topography-to-connectome translation (0.43{+/-}0.08). Importantly, translated connectomes retained identifiability and brain-cognition associations. These findings establish a direct mapping from spatial topography to connectomes that can be used to integrate scientific insights across rsfMRI sub-fields. This is an important step towards broadening our conceptualization of the connectome and supporting broader integration of findings to inform a complete understanding of the human connectome.

Naranjo Rincon, S., Ahmad, F., Easley, T., Shoushtari, S., Glatard, T., Kiar, G., Modi, H., Dahan, S., Robinson, E., Kamilov, U., Bijsterbosch, J.

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