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G quadruplex DNA facilitates a pervasive path to homologous recombination

Preprint Created on 08 Jun 2026 bioRxiv

Homologous recombination (HR) requires efficient homology search and strand invasion, yet how homologous templates are identified within the nucleus remains unclear. Here, we identify G-quadruplex (G4) DNA structures as pervasive effectors of template strand invasion and uncover the G4 helicase DHX36 as a potent suppressor of this process. DHX36 loss stabilizes G4s, enhances HR, and accelerates repair of replication-associated DNA breaks. G4-mediated HR depends on the non-canonical strand invasion factors RAD51AP1, WDR48, and USP1, and requires G4 motifs within the homologous repair template. DHX36 loss partially restores HR and PARP inhibitor resistance in BRCA1-deficient cells, while promoting aberrant recombination and Alternative Lengthening of Telomeres (ALT). Together, our findings establish dynamic G4 regulation as a key determinant of homology search, genome maintenance, and recombination fidelity.

Thakur, B. L., Basak, P., Khurana, S., Sharma, S., Lai, Y.-H., Nguyen, T., Zhao, X., Ramanarayanan, V., Batista, P. J., Stracker, T. H., Oberdoerffer, P.

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